How to integrate Semanticscholar MCP with Claude Agent SDK

This guide walks you through connecting Semanticscholar to the Claude Agent SDK using the Composio tool router. By the end, you'll have a working Semanticscholar agent that can find the latest papers on graph neural networks, list citations for a specific research paper, summarize an author’s recent publications through natural language commands. This guide will help you understand how to give your Claude Agent SDK agent real control over a Semanticscholar account through Composio's Semanticscholar MCP server. Before we dive in, let's take a quick look at the key ideas and tools involved.

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Semantic Scholar is an AI-powered academic search engine for scientific literature. It helps researchers quickly discover, analyze, and understand research papers across disciplines.

20 Tools

Introduction

This guide walks you through connecting Semanticscholar to the Claude Agent SDK using the Composio tool router. By the end, you'll have a working Semanticscholar agent that can find the latest papers on graph neural networks, list citations for a specific research paper, summarize an author’s recent publications through natural language commands.

This guide will help you understand how to give your Claude Agent SDK agent real control over a Semanticscholar account through Composio's Semanticscholar MCP server.

Before we dive in, let's take a quick look at the key ideas and tools involved.

Also integrate Semanticscholar with

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TL;DR

Here's what you'll learn:
  • Get and set up your Claude/Anthropic and Composio API keys
  • Install the necessary dependencies
  • Initialize Composio and create a Tool Router session for Semanticscholar
  • Configure an AI agent that can use Semanticscholar as a tool
  • Run a live chat session where you can ask the agent to perform Semanticscholar operations

What is Claude Agent SDK?

The Claude Agent SDK is Anthropic's official framework for building AI agents powered by Claude. It provides a streamlined interface for creating agents with MCP tool support and conversation management.

Key features include:

  • Native MCP Support: Built-in support for Model Context Protocol servers
  • Permission Modes: Control tool execution permissions
  • Streaming Responses: Real-time response streaming for interactive applications
  • Context Manager: Clean async context management for sessions

What is the Semanticscholar MCP server, and what's possible with it?

The Semanticscholar MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Semantic Scholar account. It provides structured and secure access to scholarly data, so your agent can search for academic papers, retrieve detailed author profiles, analyze citations, and explore references or publication histories on your behalf.

  • Comprehensive literature search and discovery: Let your agent search for academic papers by topic, author, or relevance and retrieve lists of matching publications with rich metadata.
  • In-depth paper and author insights: Ask your agent to fetch detailed information about specific papers—including titles, abstracts, authors, and publication years—or get complete profiles for researchers and their entire body of work.
  • Citation and reference analysis: Enable your agent to trace the impact of a paper by pulling its citations or explore the foundational research it builds upon by listing its references.
  • Batch retrieval for large-scale research: Efficiently gather details on multiple papers or authors at once, streamlining reviews and bibliometric analyses across large datasets.
  • Bulk and relevance-based queries: Use advanced bulk search and filtering to identify up to thousands of papers at a time, making it easy for your agent to support systematic literature reviews and academic data exploration.

What is the Composio tool router, and how does it fit here?

What is Composio SDK?

Composio's Composio SDK helps agents find the right tools for a task at runtime. You can plug in multiple toolkits (like Gmail, HubSpot, and GitHub), and the agent will identify the relevant app and action to complete multi-step workflows. This can reduce token usage and improve the reliability of tool calls. Read more here: Getting started with Composio SDK

The tool router generates a secure MCP URL that your agents can access to perform actions.

How the Composio SDK works

The Composio SDK follows a three-phase workflow:

  1. Discovery: Searches for tools matching your task and returns relevant toolkits with their details.
  2. Authentication: Checks for active connections. If missing, creates an auth config and returns a connection URL via Auth Link.
  3. Execution: Executes the action using the authenticated connection.

Step-by-step Guide

Step by step09 STEPS
1

Prerequisites

Before starting, make sure you have:
  • Composio API Key and Claude/Anthropic API Key
  • Primary know-how of Claude Agents SDK
  • A Semanticscholar account
  • Some knowledge of Python
2

Getting API Keys for Claude/Anthropic and Composio

Claude/Anthropic API Key
  • Go to the Anthropic Console and create an API key. You'll need credits to use the models.
  • Keep the API key safe.
Composio API Key
  • Log in to the Composio dashboard.
  • Navigate to your API settings and generate a new API key.
  • Store this key securely as you'll need it for authentication.
3

Install dependencies

npm install @anthropic-ai/claude-agent-sdk @composio/core dotenv

Install the Composio SDK and the Claude Agents SDK.

What's happening:

  • @composio/core provides Composio integration for Anthropic
  • @anthropic-ai/claude-agent-sdk is the core agent framework
  • dotenv/config loads environment variables
4

Set up environment variables

bash
COMPOSIO_API_KEY=your_composio_api_key_here
USER_ID=your_user_id_here
ANTHROPIC_API_KEY=your_anthropic_api_key_here

Create a .env file in your project root.

What's happening:

  • COMPOSIO_API_KEY authenticates with Composio
  • USER_ID identifies the user for session management
  • ANTHROPIC_API_KEY authenticates with Anthropic/Claude
5

Import dependencies

import 'dotenv/config';
import readline from 'node:readline';
import { Composio } from '@composio/core';
import { query, type Options } from "@anthropic-ai/claude-agent-sdk";

dotenv.config();
What's happening:
  • We're importing all necessary libraries including the Claude Agent SDK and Composio
  • The dotenv.config() function loads environment variables from your .env file
  • This setup prepares the foundation for connecting Claude with Semanticscholar functionality
6

Create a Composio instance and Tool Router session

async function chat() {
  const { COMPOSIO_API_KEY, USER_ID } = process.env;
  if (!COMPOSIO_API_KEY || !USER_ID) {
    throw new Error('COMPOSIO_API_KEY and USER_ID required in .env');
  }

  const composio = new Composio({ apiKey: COMPOSIO_API_KEY });

  // Create Tool Router session for Semanticscholar
  const session = await composio.create(USER_ID, {
    toolkits: ['semanticscholar'],
  });
  const mcpUrl = session?.mcp.url;
What's happening:
  • The function checks for the required COMPOSIO_API_KEY environment variable
  • We're creating a Composio instance using our API key
  • The create method creates a Tool Router session for Semanticscholar
  • The returned url is the MCP server URL that your agent will use
7

Configure Claude Agent with MCP

const options: Options = {
  permissionMode: 'bypassPermissions',
  mcpServers: {
    composio: {
      type: 'http',
      url: mcpUrl,
      headers: { 'x-api-key': COMPOSIO_API_KEY }
    }
  },
  systemPrompt: 'You are a helpful assistant with access to Semanticscholar tools via Composio.',
  maxTurns: 10,
};
What's happening:
  • We're configuring the Claude Agent options with the MCP server URL
  • permissionMode: 'bypassPermissions' allows the agent to execute operations without asking for permission each time
  • The system prompt instructs the agent that it has access to Semanticscholar
  • maxTurns: 10 limits the conversation length to prevent excessive API usage
8

Create client and start chat loop

const rl = readline.createInterface({
    input: process.stdin,
    output: process.stdout,
    prompt: 'You: '
  });

  console.log('\nChat started. Type "exit" to quit.\n');

  let isProcessing = false;

  async function ask(prompt: string) {
    isProcessing = true;
    rl.pause();

    process.stdout.write('Claude is thinking...');
    const stream = query({ prompt, options });

    let firstChunk = true;
    for await (const msg of stream) {
      const content = (msg as any).message?.content || (msg as any).content;
      if (Array.isArray(content)) {
        for (const block of content) {
          if (block.type === 'text' && block.text) {
            if (firstChunk) {
              process.stdout.write('\r\x1b[K');
              process.stdout.write('Claude: ');
              firstChunk = false;
            }
            process.stdout.write(block.text);
          }
        }
      }
    }
    process.stdout.write('\n\n');

    isProcessing = false;
    rl.resume();
    rl.prompt();
  }

  rl.on('line', async (line) => {
    if (isProcessing) return;

    const input = line.trim();
    if (input === 'exit') {
      rl.close();
      process.exit(0);
    }
    if (input) await ask(input);
    else rl.prompt();
  });

  await ask('What can you help me with?');
}
What's happening:
  • The readline interface is created to handle user input and output
  • The query function is used to send the user's input to the agent
  • The chat loop continues until the user types 'exit' or 'quit'
9

Run the application

try {
  await chat();
} catch (error) {
  console.error(error);
  process.exit(1);
}
What's happening:
  • The chat function is the entry point for the application
  • The try-catch block is used to handle any errors that occur

Complete Code

Here's the complete code to get you started with Semanticscholar and Claude Agent SDK:

import 'dotenv/config';
import readline from 'node:readline';
import { Composio } from '@composio/core';
import { query, type Options } from "@anthropic-ai/claude-agent-sdk";

async function chat() {
  const { COMPOSIO_API_KEY, USER_ID } = process.env;
  if (!COMPOSIO_API_KEY || !USER_ID) {
    throw new Error('COMPOSIO_API_KEY and USER_ID required in .env');
  }

  const composio = new Composio({ apiKey: COMPOSIO_API_KEY });
  const session = await composio.create(USER_ID, {
    toolkits: ['semanticscholar']
  });
  const mcp_url = session?.mcp.url;

  const options: Options = {
    permissionMode: 'bypassPermissions',
    mcpServers: {
      composio: {
        type: 'http',
        url: mcp_url,
        headers: { 'x-api-key': COMPOSIO_API_KEY }
      }
    },
    systemPrompt: 'You are a helpful assistant with access to Semanticscholar tools via Composio.',
    maxTurns: 10,
  };

  const rl = readline.createInterface({
    input: process.stdin,
    output: process.stdout,
    prompt: 'You: '
  });

  console.log('\nChat started. Type "exit" to quit.\n');

  let isProcessing = false;

  async function ask(prompt: string) {
    isProcessing = true;
    rl.pause();

    process.stdout.write('Claude is thinking...');
    const stream = query({ prompt, options });

    let firstChunk = true;
    for await (const msg of stream) {
      const content = (msg as any).message?.content || (msg as any).content;
      if (Array.isArray(content)) {
        for (const block of content) {
          if (block.type === 'text' && block.text) {
            if (firstChunk) {
              process.stdout.write('\r\x1b[K');
              process.stdout.write('Claude: ');
              firstChunk = false;
            }
            process.stdout.write(block.text);
          }
        }
      }
    }
    process.stdout.write('\n\n');

    isProcessing = false;
    rl.resume();
    rl.prompt();
  }

  rl.on('line', async (line) => {
    if (isProcessing) return;

    const input = line.trim();
    if (input === 'exit') {
      rl.close();
      process.exit(0);
    }
    if (input) await ask(input);
    else rl.prompt();
  });

  await ask('What can you help me with?');
}

try {
  await chat();
} catch (error) {
  console.error(error);
  process.exit(1);
}

Conclusion

You've successfully built a Claude Agent SDK agent that can interact with Semanticscholar through Composio's Tool Router.

Key features:

  • Native MCP support through Claude's agent framework
  • Streaming responses for real-time interaction
  • Permission bypass for smooth automated workflows
You can extend this by adding more toolkits, implementing custom business logic, or building a web interface around the agent.
TOOLS

Supported Tools

Every Semanticscholar action and event your agent gets out of the box.

Details about an author

Retrieve detailed information about an author from Semantic Scholar, including name, affiliations, publication statistics (paperCount, citationCount, h-index), external IDs (ORCID, DBLP), and optionally papers.

Details about an author s papers

Retrieves a list of papers authored or co-authored by a specific researcher identified by their unique Semantic Scholar author ID.

Details about a paper

Examples: https://api.

Details about a paper s authors

Retrieves the list of authors for a specific paper identified by its unique paper_id in the Semantic Scholar database.

Details about a paper s citations

Retrieves a list of citations for a specific academic paper using its unique Semantic Scholar paper ID.

Details about a paper s references

Retrieves the list of references cited by a specific paper in the Semantic Scholar database.

Get dataset download links

Tool to get download links for a specific dataset within a release.

Get dataset diffs

Get download links for incremental diffs between dataset releases.

Get details for multiple authors at once

Retrieves detailed information for multiple authors from Semantic Scholar in a single API call.

Get details for multiple papers at once

Retrieve detailed information for multiple academic papers in a single API call using the Semantic Scholar paper batch endpoint.

Get paper recommendations

Tool to get paper recommendations based on positive and negative example papers.

Get recommendations for paper

Tool to get recommended papers for a single positive example paper.

Get dataset release information

Tool to retrieve metadata for a specific Semantic Scholar dataset release.

List available dataset releases

Tool to list all available dataset releases from Semantic Scholar.

Paper title search

Behaves similarly to /paper/search, but is intended for retrieval of a single paper based on closest title match to given query.

Search Bulk Papers

Tool to perform bulk search for academic papers.

Search for authors by name

Search for academic authors in the Semantic Scholar database by name.

Search papers by relevance

Tool to search for academic papers by relevance in the Semantic Scholar database.

Suggest paper query completions

Get autocomplete suggestions for paper queries.

Text snippet search

Search for text snippets (~500 words) within academic papers that match your natural language query.

FRAMEWORKS

How to build Semanticscholar MCP Agent with another framework

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Codex logo

Codex

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OpenClaw logo

OpenClaw

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Hermes logo

Hermes

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CLI

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Google ADK logo

Google ADK

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LangChain

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Vercel AI SDK

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Mastra AI logo

Mastra AI

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LlamaIndex logo

LlamaIndex

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CrewAI logo

CrewAI

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FAQ

Frequently asked questions

With a standalone Semanticscholar MCP server, the agents and LLMs can only access a fixed set of Semanticscholar tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Semanticscholar and many other apps based on the task at hand, all through a single MCP endpoint.

Yes, you can. Claude Agent SDK fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Semanticscholar tools.

Yes, absolutely. You can configure which Semanticscholar scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Semanticscholar data and credentials are handled as safely as possible.

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